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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1274340_1276241_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1274340 - 1276241
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTG
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
AACTACTGACAA
Flanking Amino Acid:
YRVVLSRLKLSQKHAAPRGQ
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
69.9
41.1
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
76.7
0.6
0.9
69.1
41.8
Minor 5ss
39.6
-1.2
3.5
55.7
48.5
Minor BPS
43
-0.5
1.9
50.47
40

Associated Gene:

Gene:
RFTN2
Ensembl Gene ID:
ENSAPLG00000005755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005976
1269596 - 1297357
27762