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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1281595_1285444_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1281595 - 1285444
Intron Length:
3850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TATATTTTAGCT
Flanking Amino Acid:
DSFVHWETSKGDYLPKSLEG
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
61.2
0.43
1.6
77.48
38.9

Associated Gene:

Gene:
RFTN2
Ensembl Gene ID:
ENSAPLG00000005755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005976
1269596 - 1297357
27762