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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12853249_12882199_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12853249 - 12882199
Intron Length:
28951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTG
5'SS Class:
major
3'SS Sequence:
TTATTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
KQHYPQTPGDSGCAGGGNAD
Intron Amino Acid Position:
955

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
72.5
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.7
85
29.5
Minor 5ss
47.1
-0.3
2.9
64.8
46.5
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045439
12806755 - 13199176
392422
ENSAPLT00000027146
12806755 - 13199176
392422
ENSAPLT00000048145
12806755 - 13199176
392422
ENSAPLT00000047857
12806755 - 13199176
392422