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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12853249_12901341_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12853249 - 12901341
Intron Length:
48093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
ELEKMKDERESGCAGGGNAD
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.7
85
29.5
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002635
12806755 - 13199176
392422