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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1286625_1292928_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1286625 - 1292928
Intron Length:
6304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTAAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTCCTTAAAT
Flanking Amino Acid:
VLPTPIVRHDSEGNLATKQV
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
70.8
0.47
0.9
67.2
37.8
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
90.6
1.35
1
101.7
23.4

Associated Gene:

Gene:
RFTN2
Ensembl Gene ID:
ENSAPLG00000005755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005976
1269596 - 1297357
27762