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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12882497_12942893_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12882497 - 12942893
Intron Length:
60397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
KKKKGFGVMLRIGAKHQELR
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
77.2
0.61
0.9
78.2
35.2
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048145
12806755 - 13199176
392422