Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12901453_12942893_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12901453 - 12942893

Intron Length:

41441

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTCAT

5'SS Class:

strong_major

3'SS Sequence:

ATACCTTAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTAAT

U12 Branch Point Sequence:

CCTTCCTTAATA

Flanking Amino Acid:

KKKKGFGVMLRFGKKKEDKS

Intron Amino Acid Position:

876

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

79.7

35.4

Major BPS

74.6

0.61

1.1

75.5

35.1

Major PPT

63.9

0.31

59.2

40.1

Minor 5ss

-0.9

2.9

58.1

46.5

Minor BPS

80.1

0.94

1.1

78.78

38.5

Associated Gene:

Gene:

PARD3B

Ensembl Gene ID:

ENSAPLG00000002583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045439

12806755 - 13199176

392422

ENSAPLT00000027146

12806755 - 13199176

392422

ENSAPLT00000002635

12806755 - 13199176

392422

ENSAPLT00000047857

12806755 - 13199176

392422