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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1293008_1297087_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1293008 - 1297087
Intron Length:
4080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTAACATTAAAA
Flanking Amino Acid:
IWNSAVQTPEKKSLRQVIGE
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.7
0.83
0.7
84.8
28.4
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
53.2
0.1
1.8
63.99
41.4

Associated Gene:

Gene:
RFTN2
Ensembl Gene ID:
ENSAPLG00000005755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005976
1269596 - 1297357
27762