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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12944287_12988002_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12944287 - 12988002
Intron Length:
43716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAAAATTTAACT
Flanking Amino Acid:
NLKASKSMDLDSSSKDFGPT
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.4
45.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
77.6
40.7
Minor 5ss
32.4
-2
2.9
32.4
41.9
Minor BPS
58.7
0.35
1.5
70.76
39.3

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047857
12806755 - 13199176
392422