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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12999312_13005570_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12999312 - 13005570
Intron Length:
6259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAT
Flanking Amino Acid:
SVIHGGAAFKDGRLRVNDQL
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.4
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.1
0.65
0.9
73.6
35.7
Minor 5ss
40
-1.1
3.2
56.4
48
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047857
12806755 - 13199176
392422
ENSAPLT00000045439
12806755 - 13199176
392422
ENSAPLT00000002635
12806755 - 13199176
392422
ENSAPLT00000048145
12806755 - 13199176
392422