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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13005757_13020168_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13005757 - 13020168
Intron Length:
14412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCCTTATTT
Flanking Amino Acid:
QEEAFLPRELKGEPNCSVLS
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67.8
43.1
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.8
83.4
26.7
Minor 5ss
43.3
-0.7
3.3
61.8
44
Minor BPS
69.4
0.69
1.6
80.58
41.6

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045439
12806755 - 13199176
392422
ENSAPLT00000027146
12806755 - 13199176
392422
ENSAPLT00000002635
12806755 - 13199176
392422
ENSAPLT00000048145
12806755 - 13199176
392422
ENSAPLT00000047857
12806755 - 13199176
392422