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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13027133_13030671_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13027133 - 13030671
Intron Length:
3539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATATTAAAA
Flanking Amino Acid:
VVPFFSSLSGRMLGLFIRGI
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.77
0.7
82
30
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
53.3
0.1
1.7
66.3
39.7

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027146
12806755 - 13199176
392422
ENSAPLT00000002635
12806755 - 13199176
392422
ENSAPLT00000048145
12806755 - 13199176
392422
ENSAPLT00000047857
12806755 - 13199176
392422
ENSAPLT00000045439
12806755 - 13199176
392422