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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13030759_13040828_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13030759 - 13040828
Intron Length:
10070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAGAT
U12 Branch Point Sequence:
AGAATATGAGAT
Flanking Amino Acid:
LSSQRTRLPVSEMTKTVEIS
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
55.2
0.13
1.2
52.5
43.3
Major PPT
88
0.86
0.6
87.9
22.2
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
37.9
-0.8
1.7
48.77
36.6

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027146
12806755 - 13199176
392422
ENSAPLT00000002635
12806755 - 13199176
392422
ENSAPLT00000048145
12806755 - 13199176
392422
ENSAPLT00000047857
12806755 - 13199176
392422
ENSAPLT00000045439
12806755 - 13199176
392422