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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13040921_13069271_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13040921 - 13069271
Intron Length:
28351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
AATCTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AATCTCTCAACA
Flanking Amino Acid:
SDHSLKHVTAGASQGSFEDG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
69
0.43
1
63.2
37.4
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
61
0.34
1.5
68.96
36.5

Associated Gene:

Gene:
PARD3B
Ensembl Gene ID:
ENSAPLG00000002583
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045439
12806755 - 13199176
392422
ENSAPLT00000027146
12806755 - 13199176
392422
ENSAPLT00000002635
12806755 - 13199176
392422
ENSAPLT00000048145
12806755 - 13199176
392422
ENSAPLT00000047857
12806755 - 13199176
392422