Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1305963_1306803_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1305963 - 1306803

Intron Length:

841

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATGC

5'SS Class:

strong_major

3'SS Sequence:

CTGGTGCTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTCCTGGTAACC

Flanking Amino Acid:

LLNSNKYFPSRVSIKESSVA

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

69.3

36.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

72.5

0.51

64.5

41.5

Minor 5ss

37.6

-1.4

3.2

50.9

45.7

Minor BPS

-0.6

2.5

54.35

44.1

Associated Gene:

Gene:

HSPE1-MOB4

Ensembl Gene ID:

ENSAPLG00000019077

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034710

1305056 - 1310940

5885

ENSAPLT00000030112

1305056 - 1314520

9465