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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1306884_1307792_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1306884 - 1307792
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGCTTGTTCACT
Flanking Amino Acid:
LCAAHKTPKECPAIDYTRHT
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
48.2
-0
2.4
71.56
45.6

Associated Gene:

Gene:
HSPE1-MOB4
Ensembl Gene ID:
ENSAPLG00000019077
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034710
1305056 - 1310940
5885
ENSAPLT00000030112
1305056 - 1314520
9465