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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1307880_1308129_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1307880 - 1308129
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTGTTTTAACA
Flanking Amino Acid:
ELNGLAVKLQSECHPDTCTQ
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.1
0.63
1
73.8
40
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
71.3
0.66
1.3
76.76
34.5

Associated Gene:

Gene:
HSPE1-MOB4
Ensembl Gene ID:
ENSAPLG00000019077
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034710
1305056 - 1310940
5885
ENSAPLT00000030112
1305056 - 1314520
9465