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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1323441_1325249_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1323441 - 1325249
Intron Length:
1809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTGT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTGTGCTCCATT
Flanking Amino Acid:
SPERLDPFADGGKTPDPKMN
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.4
38.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
42.1
-0.9
2.9
56.1
43.3
Minor BPS
46.9
-0.1
2.3
71.61
45.8

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438