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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13259491_13264354_F

Intron Information:

Intron Rank:
135200
Intron Class:
major
Intron Phase:
Intron Coordinates:
13259491 - 13264354
Intron Length:
4864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
82.6
24.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.8
0.94
0.6
87.1
23.5
Minor 5ss
37.7
-1.4
3
49
47.2
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022725
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038491
13258339 - 13264762
6424
ENSAPLT00000018014
13258339 - 13264762
6424