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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1327092_1327854_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1327092 - 1327854
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TGTGTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTTCTCAAAA
Flanking Amino Acid:
RWDETPKTERDTPGHGSGWA
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77
0.61
0.9
74.7
40
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
56.6
0.2
1.7
65.4
40.7

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438