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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1329466_1329556_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1329466 - 1329556
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATGTG
5'SS Class:
major
3'SS Sequence:
GATTTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCCTATTAATT
Flanking Amino Acid:
DDIQYFDKLLVDVDESTLSP
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.2
38.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.4
0.59
0.9
70.6
39.8
Minor 5ss
35.8
-1.6
3.4
45.5
45
Minor BPS
56.6
0.28
1.6
70.96
40

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438