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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1330585_1331011_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1330585 - 1331011
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGGA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
DDLVRPYVHKILVVIEPLLI
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
65
41.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
33.6
-1.9
3
41.3
45
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438