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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1331494_1331755_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1331494 - 1331755
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TGGTCCTCAACA
Flanking Amino Acid:
LRSLVEIIEHGLVDEQQKVR
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
82
0.72
0.9
75.8
37.9
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
71.2
0.66
1.5
76.79
40

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438