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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1333242_1333474_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1333242 - 1333474
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTGACCTAATT
Flanking Amino Acid:
LYAFQEQTTEDSVMLNGFGT
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
78.3
0.7
1
80
32.1
Major PPT
77.7
0.62
0.9
70.5
40
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
57.8
0.32
2
81.7
39.9

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438