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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13341641_13424587_F

Intron Information:

Intron Rank:
135287
Intron Class:
major
Intron Phase:
Intron Coordinates:
13341641 - 13424587
Intron Length:
82947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTATGCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.7
0.8
0.8
80.1
31.9
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
59.9
0.39
2
80.58
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022768
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032009
13337188 - 13425054
87867