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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1334663_1335592_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1334663 - 1335592
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTTATTGACA
Flanking Amino Acid:
NTFGYIAKAIGPHDVLATLL
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.5
0.8
0.8
77.6
36.5
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
61.2
0.35
1.6
70.44
34.8

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438