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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1336566_1337834_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1336566 - 1337834
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATAAAAC
Flanking Amino Acid:
PCRMLQYCLQGLFHPARKVR
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
48.7
-0.1
2.1
70.18
40.5

Associated Gene:

Gene:
SF3B1
Ensembl Gene ID:
ENSAPLG00000003993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004118
1322556 - 1337993
15438