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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13405249_13406062_R

Intron Information:

Intron Rank:
134795
Intron Class:
major
Intron Phase:
Intron Coordinates:
13405249 - 13406062
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AACCACTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.1
0.77
0.8
76.9
36.6
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
45.8
-0.3
1.7
51.47
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019850
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024039
13405037 - 13406327
1291