Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13456248_13463104_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13456248 - 13463104

Intron Length:

6857

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTCATATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

GTTTTCATATTT

Flanking Amino Acid:

LLCFQFGALCDQLHVSDSQV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

36.6

Major BPS

100

1.24

0.5

100

Major PPT

83.8

0.76

0.8

81.2

35.3

Minor 5ss

30.8

-2.2

2.6

33.6

35.6

Minor BPS

55.1

0.24

1.9

77.23

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020560

13454235 - 13463162

8928