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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13485662_13486438_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13485662 - 13486438
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCATATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTCCCATATTT
Flanking Amino Acid:
IISAVVVGKAIQRRRRLTTG
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.3
0.64
0.9
71.7
37.7
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
52.2
0.15
1.9
74.34
42.6

Associated Gene:

Gene:
CTLA4
Ensembl Gene ID:
ENSAPLG00000001966
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001990
13485478 - 13487441
1964