Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13622477_13631168_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

13622477 - 13631168

Intron Length:

8692

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTTTTCTTC

5'SS Class:

weak_minor

3'SS Sequence:

TTTCATCAATCAG|T

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTCATCAATC

Flanking Amino Acid:

EVVSLIQSFFSKHPINFTEE

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

46.3

-0.2

1.2

45.5

36.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

72.3

0.5

71.7

38.1

Minor 5ss

62.3

0.41

2.2

74.9

34.8

Minor BPS

61.6

0.34

1.8

74.68

35.5

Associated Gene:

Gene:

RAPH1

Ensembl Gene ID:

ENSAPLG00000000860

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001022

13617347 - 13664776

47430