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Intron Name: Anas_platyrhynchos_platyrhynchos_7_13645526_13646879_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13645526 - 13646879

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCTTAATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

GTTTTCCTAATT

Flanking Amino Acid:

EKIKEAQVKKLVIRVHMSDD

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

86.4

23.9

Major BPS

81.9

0.79

0.9

80.1

Major PPT

73.4

0.53

0.9

69.7

35.5

Minor 5ss

41.2

-1

57.8

46.8

Minor BPS

68.6

0.66

1.6

85.16

Associated Gene:

Gene:

RAPH1

Ensembl Gene ID:

ENSAPLG00000000860

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034147

13617347 - 13664776

47430

ENSAPLT00000001022

13617347 - 13664776

47430