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Intron Name: Anas_platyrhynchos_platyrhynchos_7_13647040_13649587_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13647040 - 13649587

Intron Length:

2548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

GTTATTGCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TCTTTTGTTATT

Flanking Amino Acid:

LVETISELQMERIFEDHENL

Intron Amino Acid Position:

378

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

76.2

0.59

69.7

41.4

Minor 5ss

-1.5

2.8

43.1

43.9

Minor BPS

47.1

-0.1

2.2

70.14

41.8

Associated Gene:

Gene:

RAPH1

Ensembl Gene ID:

ENSAPLG00000000860

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034147

13617347 - 13664776

47430

ENSAPLT00000001022

13617347 - 13664776

47430