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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13651502_13652885_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13651502 - 13652885
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTCCCAAACC
Flanking Amino Acid:
ADRNKEVLLEECFCGSSVTV
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.6
0.69
0.9
74.3
35.4
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
59.6
0.28
2
75.12
41.7

Associated Gene:

Gene:
RAPH1
Ensembl Gene ID:
ENSAPLG00000000860
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034147
13617347 - 13664776
47430
ENSAPLT00000001022
13617347 - 13664776
47430