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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1365270_1406293_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1365270 - 1406293
Intron Length:
41024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
MLFLQPPLVQAIFSG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019319
1365255 - 1478901
113647