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Intron Name: Anas_platyrhynchos_platyrhynchos_7_13653030_13654300_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13653030 - 13654300

Intron Length:

1271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCTAC

5'SS Class:

strong_major

3'SS Sequence:

TTGTATTTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TTGTATTTAATA

Flanking Amino Acid:

IYYVPKGKAKVSRDLVCFLQ

Intron Amino Acid Position:

489

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

35.7

Major BPS

77.8

0.69

78.2

31.8

Major PPT

73.4

0.53

70.2

39.9

Minor 5ss

50.9

0.03

2.4

66.9

44.7

Minor BPS

69.4

0.6

1.4

75.89

35.8

Associated Gene:

Gene:

RAPH1

Ensembl Gene ID:

ENSAPLG00000000860

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034147

13617347 - 13664776

47430

ENSAPLT00000001022

13617347 - 13664776

47430