Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13679848_13680169_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13679848 - 13680169

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTTTG

5'SS Class:

major

3'SS Sequence:

TGCTTATTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TGCTGCTTATTT

Flanking Amino Acid:

MGFVARVQENISDTPPPPPP

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

72.9

39.3

Major BPS

87.6

0.93

0.9

89.3

Major PPT

83.7

0.76

0.8

81.1

35.6

Minor 5ss

-0.4

2.8

63.9

41.4

Minor BPS

0.17

72.14

45.2

Associated Gene:

Gene:

ABI2

Ensembl Gene ID:

ENSAPLG00000016216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044894

13678546 - 13732370

53825