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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13751136_13751778_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13751136 - 13751778
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTCCTCATTT
Flanking Amino Acid:
RVDQHTIPKETLVLYALGVM
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
28.7
-2.4
3.4
37.1
47.5
Minor BPS
61.3
0.43
1.8
80.1
42.3

Associated Gene:

Gene:
CYP20A1
Ensembl Gene ID:
ENSAPLG00000015942
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016649
13751016 - 13761462
10447