About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13751891_13752592_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
13751891 - 13752592

Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGGGTCCC

5'SS Class:
major

3'SS Sequence:
TTATTGGTTGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTTAAAT

U12 Branch Point Sequence:
GTTAAATTGACC

Flanking Amino Acid:
PITHEKIEQLRYCRQVLCET

Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.7
0.7
1
65.8
40.2

Major BPS
64.6
0.36
1.3
73.3
39.1

Major PPT
78.9
0.65
1
73.1
41.9

Minor 5ss
28.6
-2.4
3
35.8
41

Minor BPS
49.9
-0
1.9
66.2
38.7

Associated Gene:

Gene:
CYP20A1

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13751016 - 13761462
10447