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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13752714_13754142_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13752714 - 13754142
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GTTTCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTCGATCT
Flanking Amino Acid:
SLAACTITANLCTWAVYFLA
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.7
0.71
0.8
76.4
32.3
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
52.9
0.17
2
81.66
39.7

Associated Gene:

Gene:
CYP20A1
Ensembl Gene ID:
ENSAPLG00000015942
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016649
13751016 - 13761462
10447