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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13754729_13756200_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13754729 - 13756200
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
TTTGCTTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAAATAACC
Flanking Amino Acid:
NTTRKKLYEDALKEMESTLR
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.1
0.45
1
71
33.7
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
49.2
-0
2.1
71.11
39

Associated Gene:

Gene:
CYP20A1
Ensembl Gene ID:
ENSAPLG00000015942
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016649
13751016 - 13761462
10447