Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13757151_13757827_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13757151 - 13757827

Intron Length:

677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TTACTGCCAACT

Flanking Amino Acid:

LQSNLALIQKLSEELLAKWL

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

73.2

39.3

Major BPS

77.9

0.69

0.8

75.9

Major PPT

0.65

0.9

83.4

25.4

Minor 5ss

46.1

-0.4

2.6

62.1

42.6

Minor BPS

42.8

-0.4

2.4

67.26

Associated Gene:

Gene:

CYP20A1

Ensembl Gene ID:

ENSAPLG00000015942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016649

13751016 - 13761462

10447