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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13763606_13764766_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13763606 - 13764766
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTGTGTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
48
-0
2.3
73.16
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025723
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041533
13762871 - 13767714
4844