Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13766496_13767028_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13766496 - 13767028

Intron Length:

533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCATGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATAACTTGAAAA

Flanking Amino Acid:

HEEPNTPPVLGLREGAMLLV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

67.9

0.4

67.3

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

51.9

0.06

1.5

62.15

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041533

13762871 - 13767714

4844