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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13776951_13777636_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13776951 - 13777636
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TTGTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ACATACATAATG
Flanking Amino Acid:
QGFLSIRDLYSLNLSISPLA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.5
0.78
0.8
82.2
34.1
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
48.2
-0.2
1.8
52.79
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027901
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018513
13774087 - 13788556
14470