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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13779051_13779723_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13779051 - 13779723
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
CTTACCTAAATT
Flanking Amino Acid:
ELDMAVSGSKDGTVIMRTIR
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
79.7
0.67
0.9
73.8
36.9
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
64.9
0.55
1.7
80.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027901
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018513
13774087 - 13788556
14470