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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13786650_13787152_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13786650 - 13787152
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACATTACA
Flanking Amino Acid:
DFICKHRKALESEYVSAHLH
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
49.3
-0
2.1
71.66
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027901
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018513
13774087 - 13788556
14470