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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13828392_13829761_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13828392 - 13829761
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
ATTGCCTTCATA
Flanking Amino Acid:
LLVKFFIILCRNLANVEEIG
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
67.6
0.44
1.2
75
40
Major PPT
71.7
0.49
0.8
65.6
35.5
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
61.5
0.35
1.8
73.28
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017302
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046182
13827506 - 13851682
24177