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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13829924_13835142_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13829924 - 13835142
Intron Length:
5219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
LDVDFEKLPTRVDDVPPGIS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89.7
25.5
Minor 5ss
41.2
-1
2.5
51.4
45.1
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017302
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046182
13827506 - 13851682
24177