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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13868677_13870571_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13868677 - 13870571
Intron Length:
1895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATAACC
5'SS Class:
major
3'SS Sequence:
ATGCTACCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAGAT
U12 Branch Point Sequence:
GCAGTCAGACCA
Flanking Amino Acid:
QRQPTFLDKTSCPLLSIRAL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
65.7
38.3
Major BPS
52.7
0.07
1.1
48.6
36.6
Major PPT
63
0.29
1
57
38.3
Minor 5ss
35.3
-1.7
2.9
46.4
41.5
Minor BPS
38.3
-0.8
1.8
42.11
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018471
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022707
13868329 - 13870694
2366